Data Formats

Standardized schemas for seamless data exchange and interoperability

General

Universal Formats

JSON

Primary format for API requests and responses. Full schema documentation with JSON Schema validation available for all endpoints.

Input Output

CSV/TSV

Tabular data export for spreadsheet compatibility. Configurable delimiters, headers, and encoding options for maximum flexibility.

Input Output

XML

Legacy system compatibility and regulatory submission formats. XSD schemas provided for validation.

Input Output

Parquet

Columnar format for large-scale analytics. Efficient compression and compatibility with big data tools like Spark and Pandas.

Output
Biological

Domain-Specific Formats

SBML

Systems Biology Markup Language for computational models. Import existing pathway and kinetic models directly into digital twin simulations.

Levels 2 & 3 supported

SED-ML

Simulation Experiment Description ML for reproducible simulations. Define simulation protocols, algorithms, and output specifications.

L1V4 supported

CellML

Mathematical modeling of biological systems. Import cell physiology models for integration with organ-level simulations.

Version 2.0 supported

COMBINE Archive

Package multiple related files (models, simulations, metadata) in a single archive for complete reproducibility.

OMEX format
Chemical

Compound Data Formats

SMILES
Simplified molecular-input line-entry system for chemical structures. Supports canonical and isomeric SMILES.
InChI
IUPAC International Chemical Identifier for unique structure identification and database linking.
SDF/MOL
Structure-data files with 2D/3D coordinates. Batch upload compound libraries with associated properties.
PDB
Protein Data Bank format for protein structures and ligand-receptor complexes used in binding simulations.
Imaging

Image & Microscopy Formats

OME-TIFF
Multi-dimensional microscopy
DICOM
Medical imaging standard
NIfTI
Neuroimaging format
HDF5
High-throughput screening
Previous: API Documentation Next: Industry Standards